Check MD5 in windows using fciv
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The File Checksum Integrity Verifier (FCIV) is a command-prompt utility
that computes and verifies cryptographic hash values of files. FCIV
can compute MD5 or SHA-1 cryptographic hash values. These values can be
displayed on the screen or saved in an XML file database for later use
and verification.
fciv filename
more details : http://support.microsoft.com/kb/841290